OK, I was sure this had been covered elsewhere - but my searches arent finding anything helpful. We have successfully got gnu running on the mac (Mac OSX - 10.4), but still cant analyse matches. On converting files in javafibs - which it seems to do quite happily - the jellyfish file remains woefully empty....
Where are they going - is it doing it at all?? Does anyone have answers better than the current transferring the unconverted file from one machine to the other, converting it there and then analysing as usual?